Guess that subplot was just thrown to the wayside as well, eh?
Clearly they forgot to add that part in there, or because they changed the ending so drastically, it made the event impossible & just a nice conversational sentiment between you & Dr. Chakwas. A nice sentimental gesture before you go off & are forced to sacrifice yourself for the good of a galaxy that doesn't exist yet & which you will never know.
I was really looking forward to seeing that bottle of wine popped open, with all the Normandy crew standing around & celebrating emphatically as a bit of the bubbly poured all over their faces & down their gullets. Would have been really nice.
Disappointing, just disappointing all around...