It looks like there was a problem with the SXS manifest for this binary. This manifest is used when multiple versions of a binary need to be referenced. Since this shouldn't occur with MSE, I don't think this will be an issue.
Are you able to open the MSE UI and start a scan? If so, you can ignore this error. In the meantime, I will take a look and see if I can reproduce the manifest error.
Jeff Toole - Microsoft Antimalware - This post is provided as-is with no warranty or support.
Microsoft Antimalware - This post is provided as-is with no warranty or support.
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