Split from this thread.
I'm a little late to this conversation, however, this may help others.
My document was over 150 pages and had section breaks throughout. Pagination started over a few times where it shouldn't have, and the "Continue from previous section" option did not work. I turned the Show/Hide tool on and found that the problems was caused
by having consecutive section breaks like this:
----------------------------Section Break Continuous)-------------
----------------------------Section Break (Next Page)--------------
I deleted the extra Section Break and then used the "Continue from previous section" option and it finally numbered the pages straight through the document.